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| EUR | EST | 2000 - 2009 | Points | Logo | CL | UC | Chp | CW |
| 304 | 1 | FCI Levadia Tallinn | 254,68 |
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6 | 4 | ||
| 371 | 2 | FC Flora Tallinn | 213,40 |
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3 | 2 | ||
| 468 | 3 | FC TVMK Tallinn † | 178,07 |
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1 | 2 | ||
| 535 | 4 | JK Narva Trans | 156,01 |
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1 | |||
| 817 | 5 | JK Tulevik Viljandi | 91,60 |
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| 940 | 6 | JK Tammeka Tartu | 70,67 |
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| 7 | FC Kuressaare | 55,36 |
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| 8 | FC Warrior Valga | 49,92 |
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| 9 | FC Levadia-2 Tallinn | 43,31 |
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1 | ||||
| 10 | JK Järve | 41,88 |
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| 11 | Pärnu JK Vaprus | 39,73 |
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| 12 | JK Tallina Kalev | 32,61 |
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| 13 | JK Pärnu Tervis | 30,84 |
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| 14 | JK Sillamäe Kalev | 27,38 |
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| 15 | FC Ajax Tallinn | 26,97 |
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