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| EUR | EST | 1990 - 1999 | Points | Logo | CL | CWC | UC | Chp | CW |
| 486 | 1 | FC Flora Tallinn | 156,70 |
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4 | 2 | |||
| 537 | 2 | FC Lantana Tallinn † | 143,58 |
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2 | 1 | |||
| 690 | 3 | FCI Levadia Tallinn | 104,99 |
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3 | ||||
| 774 | 4 | JK Narva Trans | 88,14 |
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| 856 | 5 | FC TVMK Tallinn † | 75,83 |
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| 862 | 6 | FC Norma Tallinn † | 75,09 |
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2 | 1 | |||
| 872 | 7 | JK Eesti Põlevkivi Jõhvi † | 72,97 |
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| 8 | JK Pärnu Tervis | 49,27 |
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| 9 | JK Tulevik Viljandi | 41,29 |
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| 10 | FC Dünamo Tallinn | 32,12 |
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| 11 | Pärnu JK | 29,80 |
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| 12 | JK Vall Tallinn | 27,27 |
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| 13 | JK Sillamäe Kalev | 21,70 |
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| 14 | FC Lelle | 21,09 |
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| 15 | JK Tammeka Tartu | 20,99 |
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