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| EUR | MKD | 1990 - 1999 | Points | Logo | CL | CWC | UC | Chp | CW |
| 281 | 1 | FK Vardar Skopje | 247,47 |
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3 | 4 | |||
| 431 | 2 | Sileks FC Kratovo | 171,78 |
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3 | 2 | |||
| 591 | 3 | FC Shkupi Skopje | 129,65 |
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1 | 1 | |||
| 612 | 4 | FK Pelister Bitola | 123,22 |
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| 680 | 5 | FK Pobeda Prilep | 107,35 |
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| 827 | 6 | FK Makedonija GP Skopje | 79,22 |
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| 868 | 7 | FK Balkan 1921 Skopje | 73,88 |
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| 870 | 8 | FK Cementarnica-55 Skopje | 73,44 |
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| 882 | 9 | FK Sasa Makedonska Kamenica | 71,59 |
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| 923 | 10 | GFK Tikveš Kavadarci | 67,12 |
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| 959 | 11 | FK Belasica Strumica | 63,97 |
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| 974 | 12 | FK Borec Veles | 62,93 |
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| 977 | 13 | FK Osogovo Kočani | 62,39 |
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| 14 | FK Bregalnica Štip | 46,13 |
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| 15 | FK Rudar Probištip | 38,28 |
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| 16 | FK Skopje | 35,20 |
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| 17 | GFK Ohrid Lihnidos | 34,14 |
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| 18 | FK Ljuboten Tetovo | 32,68 |
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